Detailed information of SNP:
|
SNP ID:
sf0710359013(Gbrowse)
Chromosome: chr07 Position: 10359013 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 62.76% | 37.24% |
| All Indica | 789 | 91.38% | 8.62% |
| All Japonica | 496 | 18.15% | 81.85% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 369 | 97.02% | 2.98% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 209 | 76.56% | 23.44% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710359013 | T->A | INTERGENIC | None |