Detailed information of SNP:
|
SNP ID:
sf0710360777(Gbrowse)
Chromosome: chr07 Position: 10360777 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.18% | 7.82% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 85.97% | 14.03% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710360777 | G->A | LOC_Os07g17530(LOC_Os07g17530.1) | Synonymous |