Detailed information of SNP:
|
SNP ID:
sf0710361102(Gbrowse)
Chromosome: chr07 Position: 10361102 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 58.99% | 41.01% |
| All Indica | 715 | 29.09% | 70.91% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 64 | 71.88% | 28.12% |
| Indica I | 327 | 28.44% | 71.56% |
| Indica II | 194 | 20.10% | 79.90% |
| Indica Intermediate | 194 | 39.18% | 60.82% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710361102 | G->A | LOC_Os07g17530(LOC_Os07g17530.1) | INTRON |