Detailed information of SNP:
|
SNP ID:
sf0710363269(Gbrowse)
Chromosome: chr07 Position: 10363269 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 57.32% | 42.68% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 494 | 1.42% | 98.58% |
| Aus | 56 | 32.14% | 67.86% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 2 | 50.00% | 50.00% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710363269 | G->A | LOC_Os07g17530(LOC_Os07g17530.1) | INTRON |