Detailed information of SNP:
|
SNP ID:
sf0710365384(Gbrowse)
Chromosome: chr07 Position: 10365384 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 51.05% | 48.95% |
| All Indica | 768 | 86.46% | 13.54% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 65 | 24.62% | 75.38% |
| Indica I | 360 | 91.39% | 8.61% |
| Indica II | 205 | 90.24% | 9.76% |
| Indica Intermediate | 203 | 73.89% | 26.11% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710365384 | G->C | LOC_Os07g17530(LOC_Os07g17530.1) | Non-Synonymous SNP |