Detailed information of SNP:
|
SNP ID:
sf0710368630(Gbrowse)
Chromosome: chr07 Position: 10368630 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 55.48% | 44.52% |
| All Indica | 786 | 83.21% | 16.79% |
| All Japonica | 493 | 15.01% | 84.99% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 368 | 85.87% | 14.13% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 331 | 19.34% | 80.66% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710368630 | A->G | LOC_Os07g17540(LOC_Os07g17540.1) | Non-Synonymous SNP |