Detailed information of SNP:
|
SNP ID:
sf0710388118(Gbrowse)
Chromosome: chr07 Position: 10388118 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1266 | 65.72% | 34.28% |
| All Indica | 660 | 38.79% | 61.21% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 60 | 76.67% | 23.33% |
| Indica I | 303 | 42.57% | 57.43% |
| Indica II | 182 | 25.27% | 74.73% |
| Indica Intermediate | 175 | 46.29% | 53.71% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710388118 | A->G | LOC_Os07g17590(LOC_Os07g17590.1) | INTRON |