Detailed information of SNP:
|
SNP ID:
sf0710392286(Gbrowse)
Chromosome: chr07 Position: 10392286 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 57.57% | 42.43% |
| All Indica | 795 | 86.67% | 13.33% |
| All Japonica | 494 | 14.37% | 85.63% |
| Aus | 62 | 43.55% | 56.45% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 334 | 20.66% | 79.34% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710392286 | C->T | LOC_Os07g17600(LOC_Os07g17600.1) | Synonymous |