Detailed information of SNP:
|
SNP ID:
sf0710392337(Gbrowse)
Chromosome: chr07 Position: 10392337 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 59.27% | 40.73% |
| All Indica | 792 | 89.14% | 10.86% |
| All Japonica | 493 | 14.81% | 85.19% |
| Aus | 63 | 46.03% | 53.97% |
| Indica I | 371 | 93.26% | 6.74% |
| Indica II | 211 | 91.47% | 8.53% |
| Indica Intermediate | 210 | 79.52% | 20.48% |
| Temperate Japonica | 334 | 21.26% | 78.74% |
| Tropical Japonica | 92 | 1.09% | 98.91% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710392337 | A->G | INTERGENIC | None |