Detailed information of SNP:
|
SNP ID:
sf0710392351(Gbrowse)
Chromosome: chr07 Position: 10392351 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 52.05% | 47.95% |
| All Indica | 795 | 86.42% | 13.58% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 372 | 90.05% | 9.95% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 75.71% | 24.29% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710392351 | G->A | INTERGENIC | None |