Detailed information of SNP:
|
SNP ID:
sf0710417370(Gbrowse)
Chromosome: chr07 Position: 10417370 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 56.65% | 43.35% |
| All Indica | 792 | 91.16% | 8.84% |
| All Japonica | 483 | 2.07% | 97.93% |
| Aus | 66 | 48.48% | 51.52% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 206 | 79.61% | 20.39% |
| Temperate Japonica | 323 | 1.86% | 98.14% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710417370 | G->A | LOC_Os07g17630(LOC_Os07g17630.1) | Synonymous |