Detailed information of SNP:
|
SNP ID:
sf0710431734(Gbrowse)
Chromosome: chr07 Position: 10431734 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1371 | 51.71% | 48.29% |
| All Indica | 758 | 19.39% | 80.61% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 64 | 59.38% | 40.62% |
| Indica I | 346 | 18.50% | 81.50% |
| Indica II | 207 | 12.56% | 87.44% |
| Indica Intermediate | 205 | 27.80% | 72.20% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710431734 | C->T | LOC_Os07g17670(LOC_Os07g17670.1) | INTRON |