Detailed information of SNP:
|
SNP ID:
sf0710447836(Gbrowse)
Chromosome: chr07 Position: 10447836 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 54.59% | 45.41% |
| All Indica | 799 | 89.74% | 10.26% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710447836 | G->A | INTERGENIC | None |