Detailed information of SNP:
|
SNP ID:
sf0710452847(Gbrowse)
Chromosome: chr07 Position: 10452847 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1191 | 71.96% | 28.04% |
| All Indica | 623 | 55.22% | 44.78% |
| All Japonica | 466 | 92.06% | 7.94% |
| Aus | 58 | 79.31% | 20.69% |
| Indica I | 293 | 59.04% | 40.96% |
| Indica II | 165 | 35.15% | 64.85% |
| Indica Intermediate | 165 | 68.48% | 31.52% |
| Temperate Japonica | 305 | 88.85% | 11.15% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 31 | 80.65% | 19.35% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710452847 | G->A | INTERGENIC | None |