Detailed information of SNP:
|
SNP ID:
sf0710469189(Gbrowse)
Chromosome: chr07 Position: 10469189 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 60.13% | 39.87% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 490 | 3.47% | 96.53% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 328 | 2.74% | 97.26% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 9 | 44.44% | 55.56% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710469189 | C->T | INTERGENIC | None |