Detailed information of SNP:



SNP ID: sf0710469189(Gbrowse)

Chromosome: chr07

Position: 10469189
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1402 60.13% 39.87%
All Indica798 95.61% 4.39%
All Japonica490 3.47% 96.53%
Aus63 49.21% 50.79%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate210 84.29% 15.71%
Temperate Japonica328 2.74% 97.26%
Tropical Japonica94 5.32% 94.68%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic9 44.44% 55.56%
Intermediate42 66.67% 33.33%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0710469189 C->T INTERGENIC None