Detailed information of SNP:
|
SNP ID:
sf0710492473(Gbrowse)
Chromosome: chr07 Position: 10492473 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1370 | 90.80% | 9.20% |
| All Indica | 754 | 85.41% | 14.59% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 350 | 82.00% | 18.00% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 200 | 88.00% | 12.00% |
| Temperate Japonica | 334 | 97.90% | 2.10% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710492473 | T->C | INTERGENIC | None |