Detailed information of SNP:
|
SNP ID:
sf0710492881(Gbrowse)
Chromosome: chr07 Position: 10492881 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 91.42% | 8.58% |
| All Indica | 771 | 85.60% | 14.40% |
| All Japonica | 496 | 98.79% | 1.21% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 358 | 81.56% | 18.44% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 207 | 86.47% | 13.53% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710492881 | C->A | INTERGENIC | None |