Detailed information of SNP:
|
SNP ID:
sf0710532546(Gbrowse)
Chromosome: chr07 Position: 10532546 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 97.05% | 2.95% |
| All Indica | 781 | 96.54% | 3.46% |
| All Japonica | 494 | 98.99% | 1.01% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 202 | 96.53% | 3.47% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710532546 | G->A | LOC_Os07g17800(LOC_Os07g17800.1) | INTRON |