Detailed information of SNP:
|
SNP ID:
sf0710553473(Gbrowse)
Chromosome: chr07 Position: 10553473 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 64.89% | 35.11% |
| All Indica | 799 | 94.99% | 5.01% |
| All Japonica | 484 | 15.29% | 84.71% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 322 | 19.57% | 80.43% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710553473 | G->T | INTERGENIC | None |