Detailed information of SNP:
|
SNP ID:
sf0710571698(Gbrowse)
Chromosome: chr07 Position: 10571698 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.78% | 39.22% |
| All Indica | 799 | 94.87% | 5.13% |
| All Japonica | 495 | 6.46% | 93.54% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 6.89% | 93.11% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710571698 | C->G | LOC_Os07g17860(LOC_Os07g17860.1) | INTRON |