Detailed information of SNP:
|
SNP ID:
sf0710574442(Gbrowse)
Chromosome: chr07 Position: 10574442 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1367 | 89.10% | 10.90% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 456 | 75.44% | 24.56% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 309 | 96.12% | 3.88% |
| Tropical Japonica | 84 | 23.81% | 76.19% |
| Japonica Intermediate | 63 | 42.86% | 57.14% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710574442 | G->A | INTERGENIC | None |