Detailed information of SNP:
|
SNP ID:
sf0710583278(Gbrowse)
Chromosome: chr07 Position: 10583278 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1321 | 54.58% | 45.42% |
| All Indica | 730 | 25.21% | 74.79% |
| All Japonica | 481 | 98.75% | 1.25% |
| Aus | 62 | 54.84% | 45.16% |
| Indica I | 339 | 19.76% | 80.24% |
| Indica II | 193 | 30.05% | 69.95% |
| Indica Intermediate | 198 | 29.80% | 70.20% |
| Temperate Japonica | 325 | 99.38% | 0.62% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710583278 | C->T | LOC_Os07g17890(LOC_Os07g17890.1) | Non-Synonymous SNP |