Detailed information of SNP:
|
SNP ID:
sf0710589924(Gbrowse)
Chromosome: chr07 Position: 10589924 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 57.25% | 42.75% |
| All Indica | 795 | 91.95% | 8.05% |
| All Japonica | 493 | 4.87% | 95.13% |
| Aus | 65 | 38.46% | 61.54% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 331 | 5.14% | 94.86% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710589924 | G->A | INTERGENIC | None |