Detailed information of SNP:
|
SNP ID:
sf0710602885(Gbrowse)
Chromosome: chr07 Position: 10602885 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 57.06% | 42.94% |
| All Indica | 790 | 90.38% | 9.62% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 369 | 94.31% | 5.69% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 209 | 79.90% | 20.10% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710602885 | G->A | INTERGENIC | None |