Detailed information of SNP:
|
SNP ID:
sf0710609399(Gbrowse)
Chromosome: chr07 Position: 10609399 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 796 | 90.95% | 9.05% |
| All Japonica | 496 | 8.67% | 91.33% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 95.17% | 4.83% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 334 | 10.78% | 89.22% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710609399 | A->G | INTERGENIC | None |