Detailed information of SNP:
|
SNP ID:
sf0710675734(Gbrowse)
Chromosome: chr07 Position: 10675734 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 97.16% | 2.84% |
| All Indica | 787 | 95.43% | 4.57% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 209 | 92.82% | 7.18% |
| Indica Intermediate | 207 | 97.58% | 2.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710675734 | T->C | INTERGENIC | None |