Detailed information of SNP:
|
SNP ID:
sf0710732947(Gbrowse)
Chromosome: chr07 Position: 10732947 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 60.68% | 39.32% |
| All Indica | 796 | 95.35% | 4.65% |
| All Japonica | 487 | 3.70% | 96.30% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 84.62% | 15.38% |
| Temperate Japonica | 327 | 2.14% | 97.86% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710732947 | A->G | LOC_Os07g18120(LOC_Os07g18120.1) | Synonymous |