Detailed information of SNP:
|
SNP ID:
sf0710775656(Gbrowse)
Chromosome: chr07 Position: 10775656 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 70.55% | 29.45% |
| All Indica | 797 | 97.62% | 2.38% |
| All Japonica | 491 | 28.72% | 71.28% |
| Aus | 66 | 51.52% | 48.48% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 329 | 38.30% | 61.70% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710775656 | T->C | INTERGENIC | None |