Detailed information of SNP:
|
SNP ID:
sf0710824213(Gbrowse)
Chromosome: chr07 Position: 10824213 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 56.89% | 43.11% |
| All Indica | 795 | 93.58% | 6.42% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 81.64% | 18.36% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710824213 | T->C | INTERGENIC | None |