Detailed information of SNP:
|
SNP ID:
sf0710830436(Gbrowse)
Chromosome: chr07 Position: 10830436 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 60.13% | 39.87% |
| All Indica | 796 | 91.71% | 8.29% |
| All Japonica | 482 | 12.24% | 87.76% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 208 | 85.10% | 14.90% |
| Temperate Japonica | 324 | 16.36% | 83.64% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710830436 | C->A | INTERGENIC | None |