Detailed information of SNP:
|
SNP ID:
sf0710837481(Gbrowse)
Chromosome: chr07 Position: 10837481 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 52.70% | 47.30% |
| All Indica | 796 | 27.14% | 72.86% |
| All Japonica | 489 | 89.37% | 10.63% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 34.67% | 65.33% |
| Indica II | 213 | 9.39% | 90.61% |
| Indica Intermediate | 208 | 31.73% | 68.27% |
| Temperate Japonica | 327 | 85.63% | 14.37% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710837481 | G->A | LOC_Os07g18290(LOC_Os07g18290.1) | INTRON |