Detailed information of SNP:
|
SNP ID:
sf0710880405(Gbrowse)
Chromosome: chr07 Position: 10880405 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 94.68% | 5.32% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 491 | 90.43% | 9.57% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 329 | 86.63% | 13.37% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710880405 | C->T | LOC_Os07g18360(LOC_Os07g18360.1) | Synonymous |