Detailed information of SNP:
|
SNP ID:
sf0710882865(Gbrowse)
Chromosome: chr07 Position: 10882865 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 97.31% | 2.69% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 459 | 92.16% | 7.84% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 317 | 88.64% | 11.36% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710882865 | C->T | INTERGENIC | None |