Detailed information of SNP:
|
SNP ID:
sf0710896809(Gbrowse)
Chromosome: chr07 Position: 10896809 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 81.05% | 18.95% |
| All Indica | 757 | 66.31% | 33.69% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 50.00% | 50.00% |
| Indica II | 202 | 83.66% | 16.34% |
| Indica Intermediate | 201 | 77.61% | 22.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710896809 | G->A | LOC_Os07g18400(LOC_Os07g18400.1) | INTRON |