Detailed information of SNP:
|
SNP ID:
sf0710899365(Gbrowse)
Chromosome: chr07 Position: 10899365 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 88.23% | 11.77% |
| All Indica | 775 | 82.45% | 17.55% |
| All Japonica | 496 | 94.76% | 5.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 363 | 84.85% | 15.15% |
| Indica II | 211 | 78.20% | 21.80% |
| Indica Intermediate | 201 | 82.59% | 17.41% |
| Temperate Japonica | 334 | 93.71% | 6.29% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710899365 | G->T | LOC_Os07g18410(LOC_Os07g18410.1) | INTRON |