Detailed information of SNP:
|
SNP ID:
sf0710961552(Gbrowse)
Chromosome: chr07 Position: 10961552 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 62.28% | 37.72% |
| All Indica | 796 | 94.10% | 5.90% |
| All Japonica | 494 | 8.30% | 91.70% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 333 | 8.11% | 91.89% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710961552 | C->T | INTERGENIC | None |