Detailed information of SNP:
|
SNP ID:
sf0710965157(Gbrowse)
Chromosome: chr07 Position: 10965157 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 62.46% | 37.54% |
| All Indica | 792 | 95.08% | 4.92% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 97.57% | 2.43% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 334 | 7.49% | 92.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710965157 | C->T | LOC_Os07g18530(LOC_Os07g18530.1) | Non-Synonymous SNP |