Detailed information of SNP:
|
SNP ID:
sf0710970666(Gbrowse)
Chromosome: chr07 Position: 10970666 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 87.47% | 12.53% |
| All Indica | 781 | 99.49% | 0.51% |
| All Japonica | 492 | 66.87% | 33.13% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 193 | 97.93% | 2.07% |
| Temperate Japonica | 333 | 55.26% | 44.74% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 3 | 33.33% | 66.67% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710970666 | T->A | LOC_Os07g18540(LOC_Os07g18540.1) | INTRON |