Detailed information of SNP:
|
SNP ID:
sf0710984482(Gbrowse)
Chromosome: chr07 Position: 10984482 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 51.83% | 48.17% |
| All Indica | 779 | 23.75% | 76.25% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 26.15% | 73.85% |
| Indica I | 369 | 19.78% | 80.22% |
| Indica II | 206 | 15.53% | 84.47% |
| Indica Intermediate | 204 | 39.22% | 60.78% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710984482 | C->T | LOC_Os07g18570(LOC_Os07g18570.1) | Non-Synonymous SNP |