Detailed information of SNP:
|
SNP ID:
sf0711020719(Gbrowse)
Chromosome: chr07 Position: 11020719 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 69.61% | 30.39% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 495 | 19.60% | 80.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 25.83% | 74.17% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711020719 | C->T | LOC_Os07g18640(LOC_Os07g18640.1) | SNPs that introduce stop codons |