Detailed information of SNP:
|
SNP ID:
sf0711040339(Gbrowse)
Chromosome: chr07 Position: 11040339 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.43% | 44.57% |
| All Indica | 798 | 29.95% | 70.05% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 210 | 39.05% | 60.95% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711040339 | C->T | INTERGENIC | None |