Detailed information of SNP:
|
SNP ID:
sf0711048872(Gbrowse)
Chromosome: chr07 Position: 11048872 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1396 | 69.99% | 30.01% |
| All Indica | 796 | 98.49% | 1.51% |
| All Japonica | 479 | 20.04% | 79.96% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 318 | 27.36% | 72.64% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711048872 | G->A | INTERGENIC | None |