Detailed information of SNP:
|
SNP ID:
sf0711049254(Gbrowse)
Chromosome: chr07 Position: 11049254 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 70.03% | 29.97% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 478 | 17.57% | 82.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 317 | 22.08% | 77.92% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711049254 | G->A | INTERGENIC | None |