Detailed information of SNP:
|
SNP ID:
sf0711093607(Gbrowse)
Chromosome: chr07 Position: 11093607 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 67.97% | 32.03% |
| All Indica | 795 | 98.62% | 1.38% |
| All Japonica | 490 | 13.88% | 86.12% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 328 | 15.85% | 84.15% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711093607 | T->A | LOC_Os07g18760(LOC_Os07g18760.1) | Non-Synonymous SNP |