Detailed information of SNP:
|
SNP ID:
sf0711094116(Gbrowse)
Chromosome: chr07 Position: 11094116 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 67.35% | 32.65% |
| All Indica | 794 | 97.98% | 2.02% |
| All Japonica | 489 | 13.50% | 86.50% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 93.69% | 6.31% |
| Temperate Japonica | 327 | 15.29% | 84.71% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711094116 | A->G | LOC_Os07g18760(LOC_Os07g18760.1) | Non-Synonymous SNP |