Detailed information of SNP:
|
SNP ID:
sf0711094764(Gbrowse)
Chromosome: chr07 Position: 11094764 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 67.19% | 32.81% |
| All Indica | 795 | 98.11% | 1.89% |
| All Japonica | 492 | 14.02% | 85.98% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 207 | 95.65% | 4.35% |
| Temperate Japonica | 330 | 16.06% | 83.94% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711094764 | T->C | LOC_Os07g18760(LOC_Os07g18760.1) | Synonymous |