Detailed information of SNP:
|
SNP ID:
sf0711095077(Gbrowse)
Chromosome: chr07 Position: 11095077 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1281 | 58.55% | 41.45% |
| All Indica | 673 | 29.72% | 70.28% |
| All Japonica | 496 | 97.18% | 2.82% |
| Aus | 59 | 54.24% | 45.76% |
| Indica I | 297 | 30.98% | 69.02% |
| Indica II | 189 | 19.05% | 80.95% |
| Indica Intermediate | 187 | 38.50% | 61.50% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711095077 | C->T | LOC_Os07g18760(LOC_Os07g18760.1) | SNPs that introduce stop codons |