Detailed information of SNP:
|
SNP ID:
sf0711106700(Gbrowse)
Chromosome: chr07 Position: 11106700 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 61.01% | 38.99% |
| All Indica | 788 | 37.94% | 62.06% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 62 | 45.16% | 54.84% |
| Indica I | 369 | 44.17% | 55.83% |
| Indica II | 211 | 22.75% | 77.25% |
| Indica Intermediate | 208 | 42.31% | 57.69% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711106700 | T->A | INTERGENIC | None |