Detailed information of SNP:
|
SNP ID:
sf0711113585(Gbrowse)
Chromosome: chr07 Position: 11113585 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 96.75% | 3.25% |
| All Indica | 767 | 94.65% | 5.35% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 96.03% | 3.97% |
| Indica II | 209 | 93.78% | 6.22% |
| Indica Intermediate | 205 | 93.17% | 6.83% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711113585 | T->C | INTERGENIC | None |