Detailed information of SNP:
|
SNP ID:
sf0711194687(Gbrowse)
Chromosome: chr07 Position: 11194687 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 53.70% | 46.30% |
| All Indica | 785 | 81.02% | 18.98% |
| All Japonica | 487 | 6.16% | 93.84% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 366 | 81.15% | 18.85% |
| Indica II | 209 | 83.73% | 16.27% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 326 | 5.21% | 94.79% |
| Tropical Japonica | 93 | 4.30% | 95.70% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0711194687 | T->C | LOC_Os07g18890(LOC_Os07g18890.1) | Synonymous |